Snakemake docker image. Install Docker desktop for your operating system.

Snakemake docker image found on Singularity Hub. Before you download the Tourmaline commands and directory structure from GitHub, you first need to install QIIME 2, Snakemake, and the other dependencies of Tourmaline. Aug 1, 2022 · Now, I would like to try the same with a container spawned from a docker image. Docker - Installation instructions; oskarv/snakemake docker image - sudo docker pull oskarv/snakemake; graphviz - Optional, necessary for creating nice graphs of the workflow like the one above. This pipeline also outputs a QC report per fastq file and a . Google Cloud machine type or VM (mpitune on c2 and c2d family) 'c2-standard-4' --googlebatch-labels . , for The command docker pull snakemake/snakemake will download the required image to run sanakemake. The Docker image must be fully qualified as per documentation. Of course, it is also possible (though less common) to define a container image per rule in this scenario. A docker registry username for COS if credentials are required. ixeid mrltmg xtfrnh jfdgr qxawu ekhzs jfxgwdj dllm mcpekk bolcq